Cannabis Seed Anatomy

Everything you need to know about the anatomy of cannabis plants. Come inside to get to know every aspect of the cannabis plant, from terpene-producing trichomes to photosynthesising fan leaves and everything in between! A little extra info on the cannabis plant anatomy can expand your knowledge and allow you to get better results from your cannabis seeds.

Cannabis Plants Anatomy: From Seeds To Buds

Many consumers have seen a cannabis flower and maybe leaf but have never seen a plant grow from seed.

When growing cannabis, it’s essential you become familiar with the anatomy of a cannabis plant to know what they need and prevent problems.

It’s crucial you know the parts of a cannabis plant such as roots, nodes, calyxes, and trichomes, and what they’re used for to be able to maintain a healthy garden.

1. Anatomy of female vs male plants

Cannabis plants are dioecious, this means they have separate sexes, so the plants can be male or female.

In cannabis, the female plant produces high levels of cannabinoids and develops flowers (buds) while the male plant produces low levels and develops pollen sacs.

When both of them interact, the pollen fertilizes flowers, producing seeds which are used for breeding and cannabis cultivation.

It’s essential you know which one you need to grow to achieve the desired results, so in this article, we’ll explain the main differences and the anatomy of a cannabis plant.

2. Seeds and seedlings

A seed is the first thing you need to start growing your own cannabis, a cannabis seed has a hard shell to protect the embryo, this embryo is what will develop into a seedling when germinated.

When exposed to the right temperature and moisture, you will see a seedling (baby plant) start to develop, this seedling comes out of the medium with a small pair of green rounded leaves named cotyledons.

The cotyledons already contain chlorophyll which allows the tiny leaves to perform photosynthesis but it’s only in the early vegetative stage that you will see the first pair of serrated leaves develop and this is when the plant will start to absorb energy and nutrients, and direct it to the growth of foliage and stems.

3. Roots

After 3-5 days of exposing the seed to germination conditions, you will see a white “tail” coming out of the seed, this “tail” will start to grow longer and thicker as soon as the seed is planted and will eventually become your plant’s taproot, which is the main root from where rootlets sprout.

Once the taproot grows to a considerable size, several lateral roots will start to emerge from it, forming a network of roots in the soil, this root network is responsible for absorbing water and nutrients which are vital for your plant’s growth.

4. Fan leaves

After the cotyledons have appeared, they will be exposed to sunlight. This is important because the cotyledons use photosynthesis to absorb sunlight and produce energy for the plant to grow. After a couple of days, the first serrated leaves will appear, and as the plant grows, bigger foliage will appear and each time they will have more apexes, which are the fingers of a cannabis fan leaf.

Depending on the genetics, the foliage can have five, seven, nine, or more fingers but either way, independent of the number of apexes, the fan leaves use sun, water, and C02 to produce sugars.

Also, the leaves are different depending on the genetics, for example, Indica leaves are usually wider with more fingers while Sativa leaves are thinners and have more fingers, there are also autoflowers that start with leaves similar to Ruderalis leaves and it can get complicated to differentiate so here’s a table to help you figure it out easier.

Cannabis leaf characteristics
Species Leaf characteristics
Sativa Skinnier with up to 13 “fingers”.
Indica Fat and wide leaves with up to 9 “fingers”.
Ruderalis Short and compact, developing 3-5 “fingers.

These sugars are a cannabis plant’s source of energy and it fuels growth and all the biological processes it needs.

Have in mind that even though the foliage is a part of a cannabis plant, they have low levels of cannabinoids so their purpose is to absorb sunlight, store water, and also protect the buds from sunburn but are not usually smoked.

5. Sugar leaves

Sugar leaves are regular leaves but unlike fan leaves, they’re not too big and usually grow in between the buds. This foliage can sometimes have trichomes on them but will depend on the trichome production of each specific strain.

These leaves contain less resin that buds and are usually not consumed but depending on the quality of the genetics, these leaves can be used to make edibles, oils, and extracts.

6. Pre-sex structures

The pre-sex structures appear on the internodes in the pre-flowering stage of the cannabis plant, if your plant turns out to be a male, you’ll see small balls appearing which are pollen sacs in the early stages.

These pollen sacs will eventually develop and open up, releasing the pollen needed to produce seeds, now, if you see white hairs (stigmas) instead of pollen sacs, your plant is definitely a female.

If you’re a home grower, you should “sex” your plants before they are completely mature, this will prevent the male plants from pollinating the female plants, have in mind that fertilized flowers will produce seeds which decreases the amount of cannabinoids and overall yield.

Now, if you’re a breeder or just want to experiment with cannabis breeding, you can have a breeding chamber so you can pollinate your plants in a controlled space and prevent cross-pollination because pollen is extremely light and can travel on your hair, clothes, and even by the wind.

7. Branches and stems

As said above, leaves absorb sunlight, and as new leaf growth appears, your plant will consequently get more light and the stem and branches will get thicker and thicker, developing more internodes (and more internodal spacing) on both sides of the stem.

The main part of a cannabis plant’s anatomy is the stem, the stem provides support to the foliage, branches, and flowers (basically the whole plant), inside the stem, there is a vascular system that consists of the Xylem and Phloem.

The Xylem transports water and the nutrients dissolved in water while the Phloem is responsible for transporting sugars, proteins, and other organic molecules in plants.

Sometimes plants can develop mutations, these mutations are genetic mutations so they cannot be fixed, and although some mutations can result in odd growth such as irregular branching and leaf growth, they can still produce good quality flowers, despite sometimes the yields being affected.

See also  Fruity Pebbles Cannabis Seeds

8. Nodes

Nodes are the point where branches come off from the stem, in the vegetative stage of a cannabis plant they’re parallel to each other but when your plant begins flowering the appearance of nodes can become irregular, now this isn’t a problem at all, it’s just a characteristic of some cannabis strain and is usually a trait that can help you identify a certain plant’s species.

Have in mind that nowadays most cannabis strains are hybrids (a combination of Indica and Sativa genetics) so this won’t always be 100% correct but usually, Indicas tend to have nodes that are closer together while Sativa’s nodes are usually more spaced out.

These nodes are essential because they are where the buds or pollen sacs will start to develop and it’s where the first signs of your plant’s sex appear.

9. Flowers (buds)

The buds (flowers) are the most important part for growers but also for the cannabis plant, the flowers play several roles such as attracting pollinators and producing seed (once they’re fertilized) to perpetuate the species.

Nowadays you can find feminized seeds which means the seeds will result in 100% female plants but in nature, cannabis plants are dioecious which means the plants will be male or female, as said before.

The pre-flowering stage is vital in differentiating whether the plant is a male or a female because it’s when a plant will show the first signs of its sex.

The flowers that form on the top of the stem are known as the cola, typically, a plant has one main cola but growers have come up with several methods of creating multiple main colas with plant training techniques (such as LST and HST) that help increase yields.

The main cola is known as the apical bud or main cola and it’s where most of the buds gather together to form the main bud, you’ll also see small clusters of flowers between the foliage in the internodes but, compared to the main cola, the side colas are smaller so this is why growers use both LST and HST.

These two plant training methods end up changing the structure of the plant by exposing the flowering sites to more light and airflow, allowing the buds to grow bigger while also improving their quality.

When talking about flowers, there’s a distinction between female and male flowers. Male plants usually develop 2-3 weeks earlier than female flowers and, as said above, do not develop buds but they also form colas that consist of pollen sac clusters.

10. Pistils and stigmas

The pistils and stigmas are the reproductive parts of the female flowers, most cannabis consumers know the stigmas as pistils but that is wrong because the pistils are the part where the stigmas (white hairs) grow from.

These hair-like parts are responsible for collecting pollen grains from the male flowers and consequently, produce seeds.

When a cannabis plant is fully mature, the stigmas can change color several times, usually starting with white hues, then yellow, orange, or red, and lastly, brown.

Now, have in mind that the stigmas do not affect the potency or taste because they do not store any cannabinoids and don’t have trichomes so they won’t influence the quality and effect of your buds.

11. Bracts

The bracts, which are usually called calyxes by mistake, are what actually form the buds on a cannabis plant, they are pear-shaped nodules that develop between the sugar leaves but depending on the strain, they can appear in several colors, shapes, and sizes.

When the stigmas get pollinated, the bracts essentially turn into an ovary (seed incubator) which allows the seeds to grow and ripen but ends up affecting the yields and can affect the resin quantity on your buds, that’s why “sinsemilla” or feminized seeds are preferred by growers and consumers.

A non-pollinated flower is usually trichome-rich because your harvest will have more trichomes and they are responsible for producing and storing terpenes and cannabinoids.

12. Trichomes

Trichomes are the tiny crystals found all over the buds and surrounding foliage and are considered the most important part for cannabis consumers, these mushroom-shaped glands are clear and sticky, and form a thick layer on the buds.

These mushroom-shaped glands known as trichomes can be found in different types and sizes, they are:

  • Capitate-stalked trichomes 100 µm;
  • Cystholitic trichomes 50 µm.
  • Unicellular non-glandular trichomes 20 µm;
  • Capitate sessile trichomes 20 µm;
  • Complex bulbous trichomes 10 µm and;
  • Simple bulbous trichomes 10 µm;

All “recreational strains” are THC-rich, depending on the strain, the trichome production may differ, resulting in more or fewer trichomes on your plants, but either way, all cannabis plants will produce trichomes.

For home growers, the trichomes are the standard practice to know exactly when to harvest but in nature, the compounds produce by the cannabis plant provide defense mechanisms, such as terpenes, which smell helps keep away predators.

Also, the sticky trichomes protect the buds from insects and against UV light, and although we don’t usually think about this when growing indoors, all the parts of a cannabis plant have an important role when cannabis plants grow in nature.

13. The Life Cycle of Cannabis Plants

Now that you know everything you need about the anatomy of cannabis plants, let’s understand a bit more about the life cycle of cannabis plants. Cannabis plants can take anywhere from 8 to 32 weeks to grow and mature, and during this time it goes through four stages, they are:

  • Germination stage;
  • Seedling stage;
  • Vegetative stage;
  • Flowering stage.

And it’s essential for you to understand these stages to grow healthy plants as each stage requires different light spectrums, light cycles, nutrients, and growing conditions.

The Germination Stage

Just like with any other plant, cannabis plants start from seeds. Cannabis seeds are dormant until exposed to warmth and moisture. This means that if you are looking to germinate cannabis seeds or any other type of seed, you will have to hydrate it and place it in good conditions.

After planted, seeds can take anywhere from 3 to 10 days to germinate and seeds contain enough food for 2-3 weeks, which means there’s no need to water with a nutrient solution until the seedling has come out of the soil. Once the seedling comes out of the soil, you’ll see two small rounded leaves which are called cotyledons, and this is what marks the beginning of the seedling stage.

See also  Just Cannabis Seeds

The Seedling Stage

The seedling stage of cannabis plants can take anywhere from 1- 3 weeks, and sometimes more depending on the strain and growing conditions. During the seedling stage, plants focus on developing roots and foliage, this means that the roots are still small and fragile so be careful to not overfeed or overwater them. Once you’re in the seedling stage, make sure to provide 18 hours of light and 6 hours of darkness, and remember to keep an eye on them as they’re extremely susceptible to pests and diseases.

The Vegetative Stage

After a couple of weeks in the vegetative stage, your plants will start needing more food, light, and water as the roots and foliage start to grow exponentially. During the vegetative stage, you have to make sure you’re feeding your plant higher levels of nitrogen and less phosphorus and potassium as nitrogen is needed to develop foliage. If you’re growing indoors, the general rule is to flip to 12/12 (which triggers flowering) once the plant is ⅓ or ½ of the size you want them to be by harvest.

The Flowering Stage

Once you flip to 12/12 (or when autumn comes outdoors), your plants will start flowering. The flowering stage can take anywhere from 6 to 10 weeks or even more, depending on the strain. This stage starts with the appearance of pre-flowers which will eventually fatten up and turn into those delicious sticky flowers you’ve been waiting for so long. Obviously, this is just a quick rundown and there are a lot of things to keep in mind, other than the light cycle but understanding the life cycle and anatomy of cannabis plants will allow you to anticipate problems before they happen.

14. In conclusion

Cannabis plants are millennial plants that have developed and perfected their structure throughout the years, even though we don’t see it like that, all the parts of a cannabis plant are essential for them to grow and perpetuate their species.

Feel free to leave tips and more important information to help educate fellow growers, leave a comment in the comment section below!

Cannabis Plant Anatomy: From The Bottom To The Top

Without a doubt, cannabis claims the title as one of the most beautiful plants on Earth—from its glittering trichomes and signature leaves to its complex root system. Many growers frequent their grow rooms just to stand in awe at what grows before them.

Although the flowers get most of the attention—and rightly so—every part of this complex species has a critical and interesting function. As a cultivator, it helps to familiarise yourself with the anatomy of the cannabis plant. In doing so, you’ll develop an eye for what your plant requires, what it needs less of, and when to harvest.

Explore our in-depth guide below to see the cannabis plant like never before.


Although not genetically part of the cannabis plant, mycorrhizae form a mutually beneficial relationship with cannabis roots that helps both species survive and thrive. These fungi appear all throughout nature and form a fascinating symbiotic relationship with up to 90% of plant species.


Mycorrhizal fungi participate in a give-and-take relationship with cannabis plants. These species form networks of thin, hair-like filaments in the soil—known as mycelium—and produce enzymes to break down organic matter.

After liberating nutrients from the substrate, the mycelium uptakes and shuttles them around to plants. Because cannabis roots aren’t capable of this impressive function themselves, they have to “bargain” with the mycelium to access these nutrients. Luckily, plants produce sugars during photosynthesis, and transport many of these molecules down into the roots. Here, they swap these energy-rich exudates for the nutrients they need to fulfil important physiological functions.

Mycorrhizae ultimately act as an extension of the root system. Not only do they break down organic matter to release nutrients, but they also transport these important molecules from areas plants could otherwise not reach. Ultimately, mycorrhizal fungi play a fundamental role in plant nutrition and soil biology and chemistry.


This fusion between plant and fungi occurs in the rhizosphere, or root zone. The mycelium forms a sheath-like structure around the root tip that surrounds plant cells in the root cortex. Threads of hyphae—individual strands of mycelium—extend out into the soil where they break down organic matter and even connect one plant to another, forming a biological internet.


Mycorrhizal fungi exist naturally in many different types of soil. However, there are numerous different species. To make the most of this synergistic relationship, introduce tried and tested mycorrhizal fungi products when planting or transplanting.

Cannabis plants anatomy from seed to trichomes

The cannabis plant has exploded in popularity in the past few decades. Medical cannabis is available in many countries and recreational cannabis is widely available, whether legal or not. Many people grow their a few plants at home from cannabis seeds, here is some basic information on the plant anatomy which may help increase your understanding and grow skills.

Male vs female cannabis plant anatomy
The different parts of the cannabis plant
The lifecycle of cannabis plants from seed to harvest

Male vs female cannabis plant anatomy

Most growers are only interested in growing female cannabis plants, these produce the resin-soaked buds we all know and love. Many self-sufficient hobby growers, we well as plenty of licensed legal growers, trust their crops to feminised seeds or autoflower seeds. These give rise to 95%+ female cannabis plants.

Male plants produce pollen from the male ‘flowers’. These are small sacks of balls – these look similar to a miniature bunch of grapes. Male cannabis plants and are generally discarded in order to prevent them from pollinating female plants (this would give you a crop of seeds rather than sinsemilla buds). Female plants tend to be shorter and produce the familiar looking blooms full of calyx’s, pistils and other female plant parts.

The different parts of the cannabis plant

If you’re serious about becoming a better cannabis grower it never does any harm to learn a few more details about man’s favourite medicinal herb. As your knowledge increases you will find it easier to track, understand and optimise the growth of your plant from cannabis seed to harvest.

See also  Seeding Cannabis

There are several components to the cannabis plants. The iconic leaf shape is instantly recognisable. The mature buds fill the grower with a sense of awe. Often with bright orange or fire-red hairs. Grow the best cannabis seeds and you will have a glittering coating of trichomes. These contain the cannabinoids responsible for the deliciously enjoyable psychoactive effects and the terpenes that create the rich signature aroma. Here are all the main cannabis plant parts you need to know about:

Seeds and seedlings

Cannabis seeds are produced when a female plant is pollinated by a male plant. Pollen lands on the stigma (often referred to as pistils or hails) and starts the process of seed production. Genetic characteristics of both the male and female parents are passed on in the newly formed cannabis seed. Buy them from a solid breeder and you can expect consistent, predictable results with heavy yields of THC rich buds.

Cannabis seeds are available in several different forms. Regular cannabis seeds give rise to roughly equal numbers of male and female offspring. They are popular with breeders looking for parent stock, but most growers prefer the convenience of feminised seeds or autoflower seeds which give rise to virtually-all female offspring.

Autoflower v feminised cannabis seeds explained

Root system

Cannabis roots are white/cream coloured and form an extensive network to supply the plant all the minerals and nutrients required. Roots can grow in soil, but also in coco fibre, hydroponics, aeroponics, fibre glass and other substrates. All that really matters to the cannabis plant above ground is that the plant is supplied with all the necessary water & nutrients for growth.

Everything you need to know about cannabis roots

Branches and stems

The stem is the main stalk from which the branches grow. If the growing tip is removed from the stem a shorter, bushier cannabis plant will be produced. When growing heavy-yielding cannabis strains the branches can sometimes bow down due to the weight of their own buds. If necessary, branches can be supported by tying them up.

Topping cannabis, how to do it, when and why


A node is the point at which the stem and a branch meet. Pre-flowers, the immature sexual plant parts, form at the nodes and can develop into mature blooms in the case of female cannabis plants. The spacing between the nodes is known as the internodal spacing. Internodal distance can be greater in some sativa plants than indica plants and can give an indication of whether your plant will be a compact one or will hit the roof of your tent.

Pre-sex structures

Once you have grown a few plants you will become familiar with the female pre-flowers. These are an early indication that your plant is a female. If you’re growing feminised seeds (or autoflowering cannabis seeds) you’re unlikely to see many male pre-flowers. These look like initially like small balls, and later on, look like sacks of grapes.

Fan leaves

Fan leaves are the large leaves with the characteristic cannabis leaf shape. They can reach the size of your hand, or larger. Fan leaves are one of the main areas of photosynthesis, helping the plant convert light energy for use in cell growth.

Understanding and using cannabis leaves

Sugar leaves

Sugar leaves are the small leaves found in the blooms. They are often coated in trichomes. Some growers don’t remove the smallest, most resinous sugar leaves on the buds knowing that they add extra potency. Other growers will trim them and remove them, perhaps using the sugar leaves for making cannabis oil, hash or other cannabis concentrates.

Flowers (buds, blooms or colas)

Female cannabis flowers are often known as buds. When arranged in fat, long continuous blooms they are sometimes known as colas. The heavy resin coating produced by the best cannabis genetics produces a pungent trademark cannabis aroma which can have subtle variations from strain to strain. The blooms are usually broken down into buds to dry and cure.

Breaking down the cannabis bud structure

Pistils and stigmas

The stigma is a key to the reproductive parts of the female flower. The hair-like structures (often referred to as pistils) collect pollen from male cannabis plants – though most growers work hard to prevent pollination ever happening. The pistils start life with as white and gradually darken to (usually) orange, red, or brown as the plant matures. Some cannabis strains may produce pink pistils, such as Frisian Dew, Dutch Passion’s outdoor champion.


The bract is the small tear-drop shaped structure which covers the female cannabis plant’s reproductive parts. The bracts should be densely covered in a thick layer of trichomes – these produce the highest concentration of cannabinoids in the entire cannabis plant. The calyx is a translucent covering around the ovule at the flower’s base. The calyx can’t actually be seen since it is covered by the bract.


Trichomes are the small resin glands that cover the buds and can also be found on the leaves and branches/stem. Most people consider trichomes to be small resinous stalks with a bulbous mushroom-shaped head. But there are actually several different types of trichomes, including some without the resin head.

What are the various types of cannabis trichomes?

The lifecycle of cannabis plants from seed to harvest

When the cannabis seed germinates it produces a baby plant known as a seedling. The first leaves are not the traditional serrated type, instead they are smooth and small cotyledon leaves. Cannabis seedlings need little in the way of nutrition or intense light and should be handled with care.

The cannabis seedling stage, how-to guide

As the seedling grows it enters vegetive growth. In this stage it produces roots, leaves and branches but no buds. When growing feminised seeds indoors the vegetive stage ends when daylight hours are reduced to 12 per day. When growing autoflower seeds, the cannabis genetics (not you) determine the switch from veg growth to bloom.

The cannabis vegetive stage, how-to guide

During bloom, or flowering, the female cannabis plant starts to produce buds. As these increase in number long blooms can form, sometimes as long as your arm! During the cannabis flowering stage a pungent, penetrating aroma is produced as terpenes are produced in rich quantities. Branches may need support to prevent them sagging (or breaking) under their own weight.